Identification of Upstreamcis-Acting Regulatory Elements Controlling Lineage-specific Expression of the Mouse NK Cell Activation Receptor, NKR-P1C

Belma Ljutic, James R. Carlyle, Juan Carlos Zúñiga-Pflücker
2003 Journal of Biological Chemistry  
Mouse NKR-P1C (NK1.1) is a homodimeric type II transmembrane protein expressed on natural killer (NK) cells, NKT cells, and on CD117 ؉ progenitor thymocytes capable of giving rise to cells of the T and NK lineages. Although its physiological ligands remain unknown, NKR-P1C engagement with a monoclonal antibody (mAb) leads to interferon-␥ (IFN-␥) production and the directed release of cytotoxic granules from NK cells. We have cloned and sequenced a ϳ10-kb genomic fragment corresponding to the
more » ... esponding to the 5-flanking region of the C57Bl/6 mouse NKR-P1C gene. A transcriptional initiation site has been mapped in NK cells and an NK1.1 ؉ T cell line by primer extension and rapid amplification of 5-cDNA ends (5-RACE) techniques. Although the 5flanking region of NKR-P1C is TATA-less, we have identified an initiator region and a downstream promoter element, which together constitute the principal minimal functional promoter. Computational analysis of the 10-kb 5-flanking region revealed potential regulatory factor binding sites. DNaseI hypersensitivity assays identified a single hypersensitive site (HS) about a 9-kb upstream of the transcriptional initiation site. This site, termed HS1, was able to act as a transcriptional enhancer element in an NK cell line, while minimally affecting transcription in non-NK cell lines. Moreover, the HS1 element was shown to function as a promoter, with a transcript detected only in fetal NK1.1 ؉ cells. An additional promoter and two non-coding exons were also characterized. These results identify the minimal upstream cis-acting elements, and point to a complex regulatory mechanism involved in the lineage-specific control of NKR-P1C expression in NK lymphocytes. 1 The abbreviations used are: NKC, natural killer gene complex; mAb, monoclonal antibody; HS, DNaseI hypersensitive site; RACE, rapid amplification of cDNA ends; GFP, green fluorescent protein.
doi:10.1074/jbc.m212869200 pmid:12813047 fatcat:kkrzboyhxregpiiv3j74nvckg4