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StochKit-FF: Efficient Systems Biology on Multicore Architectures
[article]
2010
arXiv
pre-print
The stochastic modelling of biological systems is an informative, and in some cases, very adequate technique, which may however result in being more expensive than other modelling approaches, such as differential equations. We present StochKit-FF, a parallel version of StochKit, a reference toolkit for stochastic simulations. StochKit-FF is based on the FastFlow programming toolkit for multicores and exploits the novel concept of selective memory. We experiment StochKit-FF on a model of HIV
arXiv:1007.1768v1
fatcat:q4pblrksrraunot37rp4xfzmfq