ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data

Alex Mitchell, Maxim Scheremetjew, Gianluca De Moro, Bruno Fosso, Monica Santamaria, Graziano Pesole, Shriya Raj, Lars Ailo Bongo, Nils Peder Willassen, Robert D. Finn
2019 Zenodo  
● Pipelines expanded to increase scope of analysis, tools updated and tailoring of analysis to meet the demands of the Marine Metagenomics community. ● Analysis pipelines described in the Common Workflow Language (CWL) to enable reproducibility, facilitate comparisons and enhance development agility. ● Benchmark datasets generated for evaluating amplicon analyses across a range of biomes and 6 different marine shotgun metagenomics datasets developed. ● Cloud deployment of pipelines to increase
more » ... ompute capacity. ● New data analysis outputs that will feed the databases developed as part of this work package. ● Examples generated for federating searches across resource programmatic interfaces. ● Wide range of different training activities and material developed. ● Major interaction with Compute (WP4) and Interoperability (WP5) platforms in sharing problems and driving solutions (e.g. AAI and CWL, respectively)
doi:10.5281/zenodo.3228301 fatcat:nb2r64odubauno62doau6n5lr4