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Qualitative translation of relations from BioPAX to SBML qual
2012
Computer applications in the biosciences : CABIOS
Motivation: The biological pathway exchange language (BioPAX) and the systems biology markup language (SBML) belong to the most popular modeling and data exchange languages in systems biology. The focus of SBML is quantitative modeling and dynamic simulation of models, whereas the BioPAX specification concentrates mainly on visualization and qualitative analysis of pathway maps. BioPAX describes reactions and relations. In contrast, SBML core exclusively describes quantitative processes such as
doi:10.1093/bioinformatics/bts508
pmid:22923304
pmcid:PMC3467751
fatcat:e437jgyzyvhzdk2zucgoy6s5ai