Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

R. Sanchez, F. Serra, J. Tarraga, I. Medina, J. Carbonell, L. Pulido, A. de Maria, S. Capella-Gutierrez, J. Huerta-Cepas, T. Gabaldon, J. Dopazo, H. Dopazo
2011 Nucleic Acids Research  
Phylemon 2.0 is a new release of the suite of web tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. It has been designed as a response to the increasing demand of molecular sequence analyses for experts and non-expert users. Phylemon 2.0 has several unique features that differentiates it from other similar web resources: (i) it offers an integrated environment that enables evolutionary analyses, format conversion, file storage and edition of results; (ii) it
more » ... gests further analyses, thereby guiding the users through the web server; and (iii) it allows users to design and save phylogenetic pipelines to be used over multiple genes (phylogenomics). Altogether, Phylemon 2.0 integrates a suite of 30 tools covering sequence alignment reconstruction and trimming; tree reconstruction, visualization and manipulation; and evolutionary hypotheses testing.
doi:10.1093/nar/gkr408 pmid:21646336 pmcid:PMC3125789 fatcat:6drjhdzqy5fabj7zakbco3fav4