Introduction to differential gene expression analysis using RNA-seq [article]

Friederike Dündar, Luce Skrabanek, Paul Zumbo
2020 Zenodo  
Comprehensive introduction to the processing and analysis of bulk RNA-seq data including basic information about Illumina-based short read sequencing, common file formats (FASTQ, SAM/BAM, BED, ...) and quality controls. Contains ready-to-use UNIX and R code; covers the most common application of bulk RNA-seq to identify genes that are differentially expressed when comparing two conditions.
doi:10.5281/zenodo.4390117 fatcat:cijrio4upzas5ovxw6yezqtbka