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Gene set analysis is often used to interpret results from upstream analysis through predefined gene sets that are linked to biological features such as cell cycle or tumorgenesis. Gene sets have been defined in the literature via various criteria and are archived by numerous databases. We compiled over 2.3 million gene sets from 17 sources, and made them accessible through a web application, GSA-Genie. Selected gene sets can be analyzed online using one of 16 statistical methods. These methodsdoi:10.1101/125443 fatcat:fmzy4era3vcarbbh72i3qzaiji