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An Adaptive Difference Distribution-Based Coding with Hierarchical Tree Structure for DNA Sequence Compression
2013
2013 Data Compression Conference
Previous reference-based compression on DNA sequences do not fully exploit the intrinsic statistics by merely concerning the approximate matches. In this paper, an adaptive difference distribution-based coding framework is proposed by the fragments of nucleotides with a hierarchical tree structure. To keep the distribution of difference sequence from the reference and target sequences concentrated, the sub-fragment size and matching offset for predicting are flexible to the stepped size
doi:10.1109/dcc.2013.45
pmid:26501129
pmcid:PMC4617277
dblp:conf/dcc/DaiXJO13
fatcat:wllx4iysqvai3bupphd6rnuld4