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Regarding the F-word: the effects of data Filtering on inferred genotype-environment associations
[article]
2020
bioRxiv
pre-print
Genotype-environment association (GEA) methods have become part of the standard landscape genomics toolkit, yet, we know little about how to filter genotype-by-sequencing data to provide robust inferences for environmental adaptation. In many cases, default filtering thresholds for minor allele frequency and missing data are applied regardless of sample size, having unknown impacts on the results. These effects could be amplified in downstream predictions, including management strategies. Here,
doi:10.1101/2020.09.08.288308
fatcat:xeuqgw42sjat7hl2jyzc2kc7ge