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PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families
2005
Nucleic Acids Research
PROtein Domain Organization and Comparison (PRODOC) comprises several programs that enable convenient comparison of proteins as a sequence of domains. The in-built dataset currently consists of $698 000 proteins from 192 organisms with complete genomic data, and all the SWISSPROT proteins obtained from the Pfam database. All the entries in PRODOC are represented as a sequence of functional domains, assigned using hidden Markov models, instead of as a sequence of amino acids. On average 69% of
doi:10.1093/nar/gki474
pmid:15980440
pmcid:PMC1160235
fatcat:wwyginneorahxjghg7abl5eira