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Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform
2020
Communications Biology
Public health authorities whole-genome sequence thousands of isolates each month for microbial diagnostics and surveillance of pathogenic bacteria. The computational methods have not kept up with the deluge of data and the need for real-time results. We have therefore created a bioinformatics pipeline for rapid subtyping and continuous phylogenomic analysis of bacterial samples, suited for large-scale surveillance. The data is divided into sets by mapping to reference genomes, then consensus
doi:10.1038/s42003-020-0869-5
pmid:32198478
fatcat:726wct4vpbfd7fxgtl76ksmer4