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The computational detection of similarities between protein 3D structures has become an indispensable tool for the detection of homologous relationships, the classification of protein families and functional inference. Consequently, numerous algorithms have been developed that facilitate structure comparison, including rapid searches against a steadily growing collection of protein structures. To this end, NCBI's Molecular Modeling Database (MMDB), which is based on the Protein Data Bank (PDB),doi:10.1093/nar/gkt1208 pmid:24319143 pmcid:PMC3965051 fatcat:ahptxplnojbqtglstonppvu33i