BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence

Benjamin Hepp, Violette Da Cunha, Florence Lorieux, Jacques Oberto
2021 Bioinformatics  
The retrieval of a single gene sequence and context from completely sequenced bacterial and archaeal genomes constitutes an intimidating task for the wet bench biologist. Existing web-based genome browsers are either too complex for routine use or only provide a subset of the available prokaryotic genomes. We have developed BAGET 2.0 (Bacterial and Archaeal Gene Exploration Tool), an updated web service granting access in just three mouse clicks to the sequence and synteny of any gene from
more » ... etely sequenced bacteria and archaea. User-provided annotated genomes can be processed as well. BAGET 2.0 relies on a local database updated on a daily basis. BAGET 2.0 befits all current browsers such as Chrome, Firefox, Edge, Opera and Safari. Internet Explorer 11 is supported. BAGET 2.0 is freely accessible at https://archaea.i2bc.paris-saclay.fr/baget/.
doi:10.1093/bioinformatics/btab082 pmid:33532841 fatcat:7h53u543yrdr5kgio7srpgfmky