SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments

Marco Trevisan-Herraz, Navratan Bagwan, Fernando García-Marqués, Jose Manuel Rodriguez, Inmaculada Jorge, Iakes Ezkurdia, Elena Bonzon-Kulichenko, Jesús Vázquez, Alfonso Valencia
2018 Bioinformatics  
Mass spectrometry-based proteomics has had a formidable development in recent years, increasing the amount of data handled and the complexity of the statistical resources needed. Here we present SanXoT, an open-source, standalone software package for the statistical analysis of high-throughput, quantitative proteomics experiments. SanXoT is based on our previously developed weighted spectrum, peptide and protein statistical model and has been specifically designed to be modular, scalable and
more » ... r-configurable. SanXoT allows limitless workflows that adapt to most experimental setups, including quantitative protein analysis in multiple experiments, systems biology, quantification of post-translational modifications and comparison and merging of experimental data from technical or biological replicates. Availability and implementation: Download links for the SanXoT Software Package, source code and documentation are available at https://wikis.cnic.es/proteomica/index.php/SSP. Contact: jvazquez@cnic.es or ebonzon@cnic.es Supplementary information: Supplementary information is available at Bioinformatics online.
doi:10.1093/bioinformatics/bty815 pmid:30252043 fatcat:kypygcfvwrcvxba4uk6swyfrdq