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A critical comparison of technologies for a plant genome sequencing project
[article]
2017
bioRxiv
pre-print
A high quality genome sequence of your model organism is an essential starting point for many studies. Old clone based methods are slow and expensive, whereas faster, cheaper short read only assemblies can be incomplete and highly fragmented, which minimises their usefulness. The last few years have seen the introduction of many new technologies for genome assembly. These new technologies and new algorithms are typically benchmarked on microbial genomes or, if they scale appropriately, human.
doi:10.1101/201830
fatcat:26df7pmmafa6noqiyiwtc6zsfu