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R/qtl2: software for mapping quantitative trait loci with high dimensional data and multi-parent populations
R/qtl2 is an interactive software environment for mapping quantitative trait loci (QTL) in experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl software package to include multi-parent populations derived from more than two founder strains, such as the Collaborative Cross and Diversity Outbred mice, heterogeneous stocks, and MAGIC plant populations. R/qtl2 is designed to handle modern high-density genotyping data and high-dimensional molecular phenotypesdoi:10.1101/414748 fatcat:y7xlwobjgzeyniqdetdcscqnze