A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2012; you can also visit the original URL.
The file type is
This paper presents the design and implementation of a generic and highly parameterised FPGA-based core for pairwise biological sequence alignment. The core is captured in the Handel-C language, which allows for high level software-like descriptions of hardware architectures. It implements the sequence alignment algorithm in hand using a pipeline of basic processing elements. This results in high performance FPGA implementations tailored to the algorithm in hand. For instance, actual hardwaredoi:10.1109/icassp.2007.366691 dblp:conf/icassp/BenkridLB07 fatcat:7wdnqcwfmfbspbqvwhrku45aoa