A profile hidden Markov model, a popular model in biological sequence analysis, can be used to model related sequences of characters transcribed from books, magazines, and other printed materials. This paper documents one application of a profile HMM: automatically producing an ebook edition from distinct print editions. The resulting ebook has virtually all the desired properties found in a publisher-prepared ebook, including accurate transcription and an absence of print artifacts such as

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... of-line hyphenation and running headers. The technique, which has particular benefits for readers and libraries that require books in an accessible format, is demonstrated using seven copies of a nineteenth-century novel.