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A multitude of factors contribute to complex diseases and can be measured with "omics" methods. Databases facilitate data interpretation for underlying mechanisms. Here, we describe the Virtual Metabolic Human (VMH, http://vmh.life) database encapsulating current knowledge of human metabolism within five interlinked resources "Human metabolism", "Gut microbiome", "Disease", "Nutrition", and "ReconMaps". The VMH captures 5,180 unique metabolites, 17,730 unique reactions, 3,288 human genes, 255doi:10.1101/321331 fatcat:abra7kq6ivbp5gtwxcihvupite