Gateways to the FANTOM5 promoter level mammalian expression atlas

Marina Lizio, Jayson Harshbarger, Hisashi Shimoji, Jessica Severin, Takeya Kasukawa, Serkan Sahin, Imad Abugessaisa, Shiro Fukuda, Fumi Hori, Sachi Ishikawa-Kato, Christopher J Mungall, Erik Arner (+29 others)
2015 Genome Biology  
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom. This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes,
more » ... promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
doi:10.1186/s13059-014-0560-6 pmid:25723102 pmcid:PMC4310165 fatcat:7p63sfdvszgc7oetvsyomnr2v4