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BioNetSim: a Petri net-based modeling tool for simulations of biochemical processes
2012
Protein & Cell
BioNetSim, a Petri net-based software for modeling and simulating biochemistry processes, is developed, whose design and implement are presented in this paper, including logic construction, real-time access to KEGG (Kyoto Encyclopedia of Genes and Genomes), and BioModel database. Furthermore, glycolysis is simulated as an example of its application. BioNetSim is a helpful tool for researchers to download data, model biological network, and simulate complicated biochemistry processes. Gene
doi:10.1007/s13238-012-2019-4
pmid:22410784
pmcid:PMC4875423
fatcat:rbyzlcc3lbafnig3pmqsqhdnqu