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Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
[article]
2022
bioRxiv
pre-print
Although clinical applications represent the next challenge in single-cell genomics and digital pathology, we are still lacking computational methods to analyse single-cell and pathomics data at a patient level for finding patient trajectories associated with diseases. This is challenging as a single-cell/pathomics data is represented by clusters of cells/structures, which cannot be easily compared with other samples. We here propose PatIent Level analysis with Optimal Transport (PILOT). PILOT
doi:10.1101/2022.12.16.520739
fatcat:yxtq6jvlkng73mraild675hq44