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Although next-generation sequencing (NGS) technology provides a comprehensive means with which to identify potential pathogens from clinical specimens, simple and user-friendly bioinformatics pipelines are expected to obtain the entire viral genome sequence, subsequently providing traceability, based on extensive molecular phylogenetic analyses. We have developed a web-based integrated NGS analysis tool for the viral genome (virus genome-targeted assembly pipeline: VirusTAP), which includesdoi:10.3389/fmicb.2016.00032 pmid:26870004 pmcid:PMC4735447 fatcat:eqont4syvvg5pmcdrzgauzlkzi