Characterization of Methanosarcina mazei JL01 isolated from Holocene Arctic Permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T

Viktoriia Oshurkova, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova, Olga Bochkareva, Viktoria Shcherbakova
2020 Proceedings of 1st International Electronic Conference on Microbiology   unpublished
A mesophilic methanogenic culture, designated JL01, was isolated from Holocene permafrost in the Russian Arctic [1]. After long-term extensive cultivation at 15°C it turned out to be a tied binary culture of archaeal (JL01) and bacterial (Sphaerochaeta associata GLS2) strains. Strain JL01 was a strict anaerobe and grew on methanol, acetate and methylamines as energy and carbon sources. Cells were irregular coccoid, non-motile, non-spore-forming, and Gram-stainpositive. Optimum conditions for
more » ... wth were 24-28 o C, pH 6.8-7.3 and 0.075-0.1 M NaCl. Phylogenetic tree reconstructions based on 16S rRNA and concatenated alignment of broadly conserved protein-coding genes revealed its close relation to Methanosarcina mazei S-6 T (similarity 99.5%). The comparison of whole genomic sequences (ANI) of the isolate and the type strain of M. mazei was 98.5%, which is higher than the values recommended for new species. Thus strain JL01 (=VKM B-2370=JCM 31898) represents the first M. mazei isolated from permanently subzero Arctic sediments. The long-term co-cultivation of JL01 with S. associata GLS2 T showed the methane production without any additional carbon and energy sources. Genome analysis of S. associata GLS2 T revealed putative genes involved in methanochondroithin catabolism.
doi:10.3390/ecm2020-07116 fatcat:yuqo6bjiwne2fdjkts3t5go5c4