KAREBrowser: SNP database of Korea Association REsource project

Chang Bum Hong, Young Jin Kim, Sanghoon Moon, Young-Ah Shin, Yoon Shin Cho, Jong-Young Lee
2010 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)  
The International HapMap Project and the Human Genome Diversity Project (HGDP) provide plentiful resources on human genome information to the public. However, this kind of information is limited because of the small sample size in both databases. A Genome-Wide Association Study has been conducted with 8,842 Korean subjects as a part of the Korea Association Resource (KARE) project. In an effort to build a publicly available browsing system for genome data resulted from large scale KARE GWAS, we
more » ... developed the KARE browser. This browser provides users with a large amount of single nucleotide polymorphisms (SNPs) information comprising 1.5 million SNPs from population-based cohorts of 8,842 samples. KAREBrowser was based on the generic genome browser (GBrowse), a webbased application tool developed for users to navigate and visu alize the genomic features and annotations in an interactive manner. All SNP information and related functions are available at the web site http://ksnp.cdc. go.kr/karebrowser/. [BMB reports 2012; 45(1): 47-50]
doi:10.1109/bibmw.2010.5703828 fatcat:5jycdg73ozbwfmf2yzbpn2udde