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Lecture Notes in Computer Science
This paper presents parallel solutions to the k-difference primer problem, targeting multicore processors and GPUs. This problem consists of finding the shortest substrings of one sequence with at least k differences from another sequence. The sequences found in the solution are candidate regions to contain primers used by biologists to amplify a DNA sequence in laboratory. To the authors' knowledge, these are the first parallel solutions proposed for the k-difference primer problem. Wedoi:10.1007/978-3-319-93698-7_39 fatcat:lpj52u6ezjfrppvf4wkolnagpa