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Phosphorylation is a post-translational modification of great interest to researchers due to its relevance in many biological processes. LC-MS/MS techniques have enabled high-throughput data acquisition with studies claiming identification and localisation of thousands of phosphosites. The identification and localisation of phosphosites emerge from different analytical pipelines and scoring algorithms, with uncertainty embedded throughout the pipeline. For many pipelines and algorithms,doi:10.1101/2022.12.15.520504 fatcat:lyumc6v3tngulercwrocpbkxza