The aim of this study was to assess the efficiency of the innovative SED-BIO system in limiting the inflow of pollutants to Jelonek Lake. The analyses were conducted in the Gniezno Lake District in Greater Poland (the western part of Poland). Physical and chemical analyses were conducted in the years 2016–2019. The results demonstrate that the system is highly effective in the reduction of such nutrients as nitrogen (NO3−—63%; NH4+—14.9%) and phosphorus (PO43−—19.3%). Although the presence of

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... anobacteria was confirmed practically throughout the whole monitoring period of the system (2016), the specimens found in most samples were not toxigenic genotypes with a potential to produce microcystins. Microcystins (3 µg·L−1) were detected only once, immediately after the SED-BIO system had been installed in the river and pond, which demonstrates that this natural toxin was eliminated from the additional pool of contaminants that might be transported to Jelonek Lake.