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We discuss the sensitivity of the high-scale SUSY at $10$-$1000$ TeV in $B^0$, $B_s$, $K^0$ and $D$ meson systems together with the neutron EDM and the mercury EDM. In order to estimate the contribution of the squark flavor mixing to these FCNCs,we calculate the squark mass spectrum, which is consistent with the recent Higgs discovery. The SUSY contribution in $\epsilon_K$ could be large, around 40% in the region of the SUSY scale $10$-$100$ TeV. The neutron EDM and the mercury EDM are alsodoi:10.3390/sym7020689 fatcat:csymo2462jeuxmjvjf43yjntym