Determination of the secondary structure and folding topology of human interleukin-4 using three-dimensional heteronuclear magnetic resonance spectroscopy

Daniel S. Garrett, Robert Powers, Carl J. March, Eric A. Frieden, G. Marius Clore, Angela M. Gronenborn
1992 Biochemistry  
The secondary structure of human recombinant interleukin-4 (IL-4) has been investigated by three-dimensional (3D) IsNand I3C-edited nuclear Overhauser (NOE) spectroscopy on the basis of the 'H, ISN, and 13C assignments presented in the preceding paper [Powers, R., Garrett, D. S., March, C. J., Frieden, E. A" Gronenborn, A. M., & Clore, G. M. (1992) Biochemistry (preceding paper in this issue)]. Based on the NOE data involving the NH, CaH, and C@H protons, as well as 3Jma coupling constant,
more » ... exchange, and 13Ca and I3CB secondary chemical shift data, it is shown that IL-4 consists of four long helices (residues 9-21, 45-64, 74-96, and 113-129), two small helical turns (residues 27-29 and 67-70), and a mini antiparallel @-sheet (residues 32-34 and 110-1 12). In addition, the topological arrangement of the helices and the global fold could be readily deduced from a number of long-range interhelical NOES identified in the 3D I3C-edited NOE spectrum in combination with the spatial restrictions imposed by three disulfide bridges. These data indicate that the helices of interleukin-4 are arranged in a left-handed four-helix bundle with two overhand connections. Abbreviations: IL-4, interleukin-4 (the numbering scheme used in the present paper includes the four-residue sequence Glu-Ala-Glu-Ala at the N-terminus of the recombinant protein which is not part of the natural human IL-4; the natural IL-4 sequence therefore starts at residue 5); NMR, nuclear magnetic resonance; CD, circular dichroism; IgE, immunoglobulin E; NOE, nuclear Overhauser effect; NOESY; nuclear Overhauser enhancement spectroscopy; HMQC, heteronuclear multiple-quantum coherence; 3D, three dimensional; 4D, four dimensional; TPPI, time-proportional phase incrementation. 0
doi:10.1021/bi00132a027 pmid:1567881 fatcat:3s7eg66a7zcsjc3qwwofc34wma