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Kinetics and Thermodynamics of Type VIII β-Turn Formation: A CD, NMR, and Microsecond Explicit Molecular Dynamics Study of the GDNP Tetrapeptide
2006
Biophysical Journal
We report an experimental and theoretical study on type VIII b-turn using a designed peptide of sequence GDNP. CD and NMR studies reveal that this peptide exists in equilibrium between type VIII b-turn and extended conformations. Extensive MD simulations give a description of the free energy landscape of the peptide in which we retrieve the same two main conformations suggested by the experiments. The free energy difference between the two conformational states is very small and the transition
doi:10.1529/biophysj.105.074401
pmid:16443656
pmcid:PMC1414573
fatcat:wosjvlx5ljh65nozajeumrre5q