Independent validation of genes and polymorphisms reported to be associated with radiation toxicity: a prospective analysis study

Gillian C Barnett, Charlotte E Coles, Rebecca M Elliott, Caroline Baynes, Craig Luccarini, Don Conroy, Jennifer S Wilkinson, Jonathan Tyrer, Vivek Misra, Radka Platte, Sarah L Gulliford, Matthew R Sydes (+7 others)
2012 The Lancet Oncology  
Several studies have reported associations between radiation toxicity and single nucleotide poly morphisms (SNPs) in candidate genes. Few associations have been tested in independent validation studies. This prospective study aimed to validate reported associations between genotype and radiation toxicity in a large independent dataset. Methods 92 (of 98 attempted) SNPs in 46 genes were successfully genotyped in 1613 patients: 976 received adjuvant breast radiotherapy in the Cambridge breast
more » ... ambridge breast IMRT trial (ISRCTN21474421, n=942) or in a prospective study of breast toxicity at the Christie Hospital, Manchester, UK (n=34). A further 637 received radical prostate radiotherapy in the MRC RT01 multicentre trial (ISRCTN47772397, n=224) or in the Conventional or Hypofractionated High Dose Intensity Modulated Radiotherapy for Prostate Cancer (CHHiP) trial (ISRCTN97182923, n=413). Late toxicity was assessed 2 years after radiotherapy with a validated photographic technique (patients with breast cancer only), clinical assessment, and patient questionnaires. Association tests of genotype with overall radiation toxicity score and individual endpoints were undertaken in univariate and multivariable analyses. At a type I error rate adjusted for multiple testing, this study had 99% power to detect a SNP, with minor allele frequency of 0·35, associated with a per allele odds ratio of 2·2. Findings None of the previously reported associations were confi rmed by this study, after adjustment for multiple comparisons. The p value distribution of the SNPs tested against overall toxicity score was not diff erent from that expected by chance. Interpretation We did not replicate previously reported late toxicity associations, suggesting that we can essentially exclude the hypothesis that published SNPs individually exert a clinically relevant eff ect. Continued recruitment of patients into studies within the Radio genomics Consortium is essential so that suffi ciently powered studies can be done and methodological challenges addressed.
doi:10.1016/s1470-2045(11)70302-3 pmid:22169268 fatcat:gvakvzwthrcdnmvdwjtjkiubhu