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Metagenomics offers a way to analyze biotopes at the genomic level and to reach functional and taxonomical conclusions. The bio-analyzes of large metagenomic projects face critical limitations: complex metagenomes cannot be assembled and the taxonomical or functional annotations are much smaller than the real biological diversity. This motivated the development of de novo metagenomic read comparison approaches to extract information contained in metagenomic datasets. However, these newarXiv:1511.08317v1 fatcat:c3opg45imfdlrpkdz6zh2gwn6i