Automated workflow composition in mass spectrometry based proteomics

Magnus Palmblad, Anna-Lena Lamprecht, Jon Ison, Veit Schwämmle, Jonathan Wren
2018 Bioinformatics  
Numerous software utilities operating on mass spectrometry (MS) data are described in the literature and provide specific operations as building blocks for the assembly of on-purpose workflows. Working out which tools and combinations are applicable or optimal in practice is often hard. Thus researchers face difficulties in selecting practical and effective data analysis pipelines for a specific experimental design.
doi:10.1093/bioinformatics/bty646 pmid:30060113 pmcid:PMC6378944 fatcat:ev5w2fvdkvaxzofrfusrmnklx4