A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf
.
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
[article]
2020
bioRxiv
pre-print
AbstractSummaryPartial order alignment, which aligns a sequence to a directed acyclic graph, is now frequently used as a key component in long-read error correction and assembly. We present abPOA (adaptive banded Partial Order Alignment), a Single Instruction Multiple Data (SIMD) based C library for fast partial order alignment using adaptive banded dynamic programming. It can work as a stand-alone multiple sequence alignment and consensus calling tool or be easily integrated into any long-read
doi:10.1101/2020.05.07.083196
fatcat:vbh57rwxc5ddhdjrytz23enjdm