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High throughput sequencing technologies have been increasingly used in basic genetic research as well as in clinical applications. More and more variants underlying Mendelian and complex diseases are being discovered and documented using these technologies. However, identifying and obtaining a short list of candidate disease-causing variants remains challenging for most of the users after variant calling, especially for people without computational skills. Results: We developed GenESysV (Genomedoi:10.1186/s12859-019-2636-5 fatcat:34shnf3ouvdldkrboty5lgmvje