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Mapping transiently formed and sparsely populated conformations on a complex energy landscape
2016
eLife
Determining the structures, kinetics, thermodynamics and mechanisms that underlie conformational exchange processes in proteins remains extremely difficult. Only in favourable cases is it possible to provide atomic-level descriptions of sparsely populated and transiently formed alternative conformations. Here we benchmark the ability of enhanced-sampling molecular dynamics simulations to determine the free energy landscape of the L99A cavity mutant of T4 lysozyme. We find that the simulations
doi:10.7554/elife.17505
pmid:27552057
pmcid:PMC5050026
fatcat:blufywhnlbfrfmekeko3xq2a5u