The microbial population (MP) is considered to be a relatively important part of soil health, quality, and productivity. Therefore, this study aimed to access the effects of tillage and rice cultivation modes on soil MP in Stagnic Anthrosols and Lateritic Red Earth soils. The treatments were as follows: (i) MDS: land tilled twice with a moldboard plow and hill-seeding of pregerminated seeds with a direct seeding machine of four to six seeds per hill at a planting space of 25 × 15 cm, (ii) RDS:

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... and tilled twice with a rotary tiller and hill-seeding of pregerminated seeds with a direct seeding machine of four to six seeds per hill at a planting space of 25 × 15 cm, (iii) MMT: land tilled twice with a moldboard plow and 15-day-old seedlings were mechanically transplanted with a transplanting machine at a transplanting hill of four to six seedlings and at a transplanting space of 25 × 15 cm, and (iv) RMT: land tilled twice with a rotary tiller and 15-day-old seedlings were mechanically transplanted with a transplanting machine at a transplanting hill of four to six seedlings and a transplanting space of 25 × 15 cm. The findings showed that MDS improved the MP and increases rice yield. MDS showed a high increase in MP in both locations and the rice productivity of 32.81% (1H; first harvest) and 13.91% (2H; second harvest) and 16.48% (1H) and 18.13% (2H) for Zeng-Cheng and Yi-Yang, respectively. In conclusion, MDS was found to be better in improving the MP and increasing rice yield and could be adopted as a suitable approach for improving soil health, quality, and productivity.