Pairing and synapsis of homologous chromosomes during meiosis is crucial for producing genetically normal gametes, and is dependent upon repair of SPO11-induced double stranded breaks (DSBs) by homologous recombination. To prevent transmission of genetic defects, diverse organisms have evolved mechanisms to eliminate meiocytes containing unrepaired DSBs or unsynapsed chromosomes. Here, we show that the CHK2 (CHEK2)-dependent DNA damage checkpoint culls not only recombination-defective mouse

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... tes, but also SPO11-deficient oocytes that are severely defective in homolog synapsis. The checkpoint is triggered by spontaneous DSBs that arise in late prophase I, accumulating above the checkpoint activation threshold (~10 DSBs) because presence of HORMAD1/2 on unsynapsed chromosome axes prevents their repair. Furthermore, Hormad2 deletion rescued fertility and meiotic DSB repair of oocytes containing a synapsis-proficient, non-crossover recombination defective mutation in a gene (Trip13) required for removal of HORMADs from synapsed chromosomes, indicating that a substantial fraction of meiotic DSBs are normally repaired by intersister recombination in mice.