COMPUTATIONAL ANALYSIS OF SOLANUM LYCOPERSICUM (TOMATO) LYCOPERSICONES CULENTUM REPRESENTING A LARGE RANGE OF INTRASPECIFIC VARIABILITY

Uma Kumari, Ashok Kumar Choudhary
unpublished
Genome analysis and annotation using genome from the libraries. All of these crops are members of the Solanaceae or nightshade family, one of the world's most important vegetable plant families in terms of both economic value and production volume. The most widely programs for global multiple sequence alignment are from the Clustal series of programs. The tomato genomic resources database is an online and interactive relational database, developed using open sources software. If two sequences
more » ... an alignment share a common ancestors, mismatches can be interpreted as a point mutation. Local alignments are more useful for dissimilar sequence motif within their larger sequence. BLAST has a bio-informatics algorithm to align sequence as if they were found in the database search. When an expectation value is increase of default value. The (TGRD), the tomato genomic resources database is an online and interactive relational database, developed using open sources software. Tomato is the model for a number of biological studies important to agriculture, such as fruit development and ripening, disease resistance and biochemical pathway of important nutrient. The coding sequence is the actual region of DNA that is translated to form proteins. While the ORF may contain introns as well, the CDS refers to those nucleotides (exons) that can be divided into cordons. In sequence, alignment is a way of arranging the sequence of DNA, RNA, or protein to identify the functional, structural or evolutionary relationship between the sequence. If two sequences in an alignment share a common ancestors, mismatches can be interpreted as a point mutation. FASTA format is a text based format for representing either nucleotide sequence or peptide sequence, in which nucleotide or amino acid is represented using single letter code. Sequence homology is a general term that indicates evolutionary relatedness among sequence. Sequence similarity is a substitution with similar chemical properties. The Clustal Colored alignment also has the colour option in the output results. In addition to maintaining the gene bank nucleic acid, sequence database, NCBI provides data retrieval system and computational resources for the analysis of gene bank data and variety of other biological data made available through NCBI.
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