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Benchmarking variant identification tools for plant diversity discovery
2019
BMC Genomics
The ability to accurately and comprehensively identify genomic variations is critical for plant studies utilizing high-throughput sequencing. Most bioinformatics tools for processing next-generation sequencing data were originally developed and tested in human studies, raising questions as to their efficacy for plant research. A detailed evaluation of the entire variant calling pipeline, including alignment, variant calling, variant filtering, and imputation was performed on different programs
doi:10.1186/s12864-019-6057-7
pmid:31500583
pmcid:PMC6734213
fatcat:ixmprlcu4nakxadlynmzpwjzxu