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Data visualization plays a key role in high-throughput biology. It is an essential tool for data exploration allowing to shed light on data structure and patterns of interest. Visualization is also of paramount importance as a form of communicating data to a broad audience. Here, we provided a short overview of the application of the R software to the visualization of proteomics data. We present a summary of R's plotting systems and how they are used to visualize and understand raw and processed MS-based proteomics data.doi:10.1002/pmic.201400392 pmid:25690415 pmcid:PMC4510819 fatcat:rfdvcmeenjcm3i3haesxljy4uq