RNA-Seq analysis of long non-coding RNAs and protein-coding gene pairs protocol v1 (protocols.io.n2tdgen) [dataset]

Julia Yue, Cindy Yanfei
2018 protocols.io  
1 1 1 This protocol described the procedures of analyzing RNA-Seq data for the expression of long non-coding RNAs (lncRNAs) as well as protein-coding genes (PCGs), as well as identifying the genomic location of lncRNAs and lncRNA-PCG pairs. As an example, we used an existing RNA-Seq dataset generated in our labotratory, which were deposited in Gene Expression Omnibus (GEO) database (accession number: GSE101650) and are available to the public. Li CY, Cui JY (2018) Regulation of protein-coding
more » ... of protein-coding gene and long noncoding RNA pairs in liver of conventional and germ-free mice following oral PBDE exposure. PLoS ONE 13(8): e0201387.
doi:10.17504/protocols.io.n2tdgen fatcat:4bv2gmkgw5bibbcpnn3ph5leni