Segment 8 encodes a structural protein of infectious salmon anaemia virus (ISAV); the co-linear transcript from Segment 7 probably encodes a non-structural or minor structural protein

E Biering, K Falk, E Hoel, J Thevarajan, M Joerink, A Nylund, C Endresen, B Krossøy
2002 Diseases of Aquatic Organisms  
In this study we present the cloning, expression and partial identification of Genomic Segment 7 of infectious salmon anaemia virus (ISAV). The nucleotide sequence corresponding to Segment 7 was isolated from a bacteriophage lambda cDNA library and contained 2 overlapping open reading frames (ORFs) of 903 and 522 bases respectively. It also contained an ISAV-specific conserved nucleotide motif in the mRNA 5' region. The co-linear transcript representing the large ORF undergoes a splicing event
more » ... hat removes a 526 nucleotide intron to form a mRNA corresponding to the smaller reading frame. Thus, ISAV Genomic Segment 7 has a similar coding strategy as influenza A virus Segments 7 and 8. The largest ORF of Segment 7 and the first ORF of Segment 8 was expressed in E. coli as fusion proteins and rabbit antiserum was raised against the recombinant protein from Segment 8. Immunoblot studies using this antiserum and a serum against purified virus, show that Segment 8 encodes one of the major structural proteins of the virus whereas the co-linear ORF of Segment 7 probably encodes a non-or minor structural protein KEY WORDS: ISAV · Splicing · Matrix · Segment 7 · Segment 8 · GenBank Accession No. AY044132 Resale or republication not permitted without written consent of the publisher Editorial responsibility: Jo-Ann Leong,
doi:10.3354/dao049117 pmid:12078979 fatcat:5prds2xqpzfrbklxchsvvsevzm