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Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design
2003
Nucleic Acids Research
Understanding the structural repertoire of RNA is crucial for RNA genomics research. Yet current methods for ®nding novel RNAs are limited to small or known RNA families. To expand known RNA structural motifs, we develop a two-dimensional graphical representation approach for describing and estimating the size of RNA's secondary structural repertoire, including naturally occurring and other possible RNA motifs. We employ tree graphs to describe RNA tree motifs and more general (dual) graphs to
doi:10.1093/nar/gkg365
pmid:12771219
pmcid:PMC156709
fatcat:otds6qix2rbodnjtmiama37fwy