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Structural protein interactions: From months to minutes
[chapter]
2004
Advances in Parallel Computing
Protein interactions are important to understand the function of proteins. PSIMAP is a protein interaction map derived from protein structures in the Protein Databank PDB and the Structural Classification of Proteins SCOP. In this paper we review how to reduce the computation of PSIMAP from months to minutes, first by designing a new effective algorithm and second by distributing the computation over a Linux PC farm using a simple scheduling mechanism. From this experience we derive some
doi:10.1016/s0927-5452(04)80084-4
fatcat:2jprrk3z2jgcvf7rdyakzsnecu