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Motivation: High-throughput sequencing has made the analysis of new model organisms more affordable. Although assembling a new genome can still be costly and difficult, it is possible to use RNAseq to sequence mRNA. In the absence of a known genome, it is necessary to assemble these sequences de novo, taking into account possible alternative isoforms and the dynamic range of expression values. Results: We present a software package named Oases designed to heuristically assemble RNA-seq reads indoi:10.1093/bioinformatics/bts094 pmid:22368243 pmcid:PMC3324515 fatcat:mxbrrybygzgpdar5jtht5ibnmm