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Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms and clarified the relationship between host-associated microbial communities and host phenotype. Shotgun metagenomic DNA sequencing is a relatively new and powerful environmental sequencing approach that provides insight into community biodiversity and function. But, the analysis of metagenomic sequences is complicated due to the complex structure of the data. Fortunately, new tools and data resources havedoi:10.3389/fpls.2014.00209 pmid:24982662 pmcid:PMC4059276 fatcat:syz36kyuq5bizjgs4onulfrs3u