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Performance Optimization for the Trinity RNA-Seq Assembler
[chapter]
2016
Tools for High Performance Computing 2015
Utilizing the enormous computing resources of high performance computing systems is anything but a trivial task. Performance analysis tools are designed to assist developers in this challenging task by helping to understand the application behavior and identify critical performance issues. In this paper we share our efforts and experiences in analyzing and optimizing Trinity, a well-established framework for the de novo reconstruction of transcriptomes from RNA-seq reads. Thereby, we try to
doi:10.1007/978-3-319-39589-0_3
fatcat:bugzctgomva5tf5bww3woa3au4