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Protein Folding Simulation by Two-Stage Optimization
[chapter]
2009
Communications in Computer and Information Science
We propose a two-stage optimization approach for protein folding simulation in the FCC lattice, inspired from the phenomenon of hydrophobic collapse. Given a protein sequence, the first stage of the approach produces compact protein structures with the maximal number of contacts among hydrophobic monomers, using the CPSP tools for optimal structure prediction in the HP model. The second stage uses those compact structures as starting points to further optimize the protein structure for the
doi:10.1007/978-3-642-04962-0_16
fatcat:w7bp623worgd7nuu7oou32d22u